Publications

2024

  1. Rajan K. S., Aryal S., Hiregange D. G., Bashan A., Madmoni H., Olami M., Doniger T., Cohen-Chalamish S., Pescher P., Taoka M., Nobe Y., Fedorenko A., Bose T., Zimermann E., Prina E., Aharon-Hefetz N., Pilpel Y., Isobe T., Unger R., Späth G. F., Yonath A. & Michaeli S. (2024) Cell Reports. 43, 5, 114203.  Abstract
  2. Sekeresova Kralova J., Donic C., Dassa B., Livyatan I., Jansen P. M., Ben-Dor S., Fidel L., Trzebanski S., Narunsky-Haziza L., Asraf O., Brenner O., Dafni H., Jona G., Boura-Halfon S., Stettner N., Segal E., Brunke S., Pilpel Y., Straussman R., Zeevi D., Bacher P., Hube B., Shlezinger N. & Jung S. (2024) Journal of Experimental Medicine. 221, 5, e20231686.  Abstract
  3. Lobinska G., Tretyachenko V., Dahan O., Nowak M. A. & Pilpel Y. (2024) PLoS Biology. 22, 3, e3002570.  Abstract
  4. Kohanovski I., Pontz M., Zande P. V., Selmecki A., Dahan O., Pilpel Y., Yona A. H. & Ram Y. (2024) Molecular Biology and Evolution. 41, 3, msae052.  Abstract

2023

  1. application/pdf
    Lobinska G., Pilpel Y. & Ram Y. (2023) Genetics. 225, 1, iyad111.  Abstract
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    Shoer S., Shilo S., Godneva A., Ben-Yacov O., Rein M., Wolf B. C., Lotan-Pompan M., Bar N., Weiss E. I., Houri-Haddad Y., Pilpel Y., Weinberger A. & Segal E. (2023) Nature Communications. 14, 5384.  Abstract
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    Lobinska G., Pilpel Y. & Nowak M. A. (2023) PLoS Biology. 21, 8 August, e3002214.  Abstract

2022

  1. application/pdf
    Narunsky-Haziza L., Sepich-Poore G. D., Livyatan I., Asraf O., Martino C., Nejman D., Gavert N., Stajich J. E., Amit G., González A., Wandro S., Perry G., Ariel R., Meltser A., Shaffer J. P., Zhu Q., Balint-Lahat N., Barshack I., Dadiani M., Gal-Yam E. N., Patel S. P., Bashan A., Swafford A. D., Pilpel Y., Knight R. & Straussman R. (2022) Cell. 185, 20, p. 3789-3806  Abstract
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    Gabzi T., Pilpel Y. & Friedlander T. (2022) Molecular Biology and Evolution. 39, 9, msac178.  Abstract
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    Zhang X., Lobinska G., Feldman M., Dekel E., Nowak M. A., Pilpel Y., Pauzner Y., Barzel B. & Pauzner A. (2022) PLoS Computational Biology. 18, 8, e1010391.  Abstract
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    Rajan K. S., Adler K., Doniger T., Cohen-Chalamish S., Aharon-Hefetz N., Aryal S., Pilpel Y., Tschudi C., Unger R. & Michaeli S. (2022) The journal of Biological chemistry. 298, 7, 102141.  Abstract
  5. Lobinska G., Pauzner A., Traulsen A., Pilpel Y. & Nowak M. (2022) Nature Human Behaviour. 6, 2, p. 193-206  Abstract
  6. Pilpel Y. (2022) Default journal. p. 1-6  Abstract

2021

  1. Jacob Berger A., Gigi E., Kupershmidt L., Meir Z., Gavert N., Zwang Y., Prior A., Gilad S., Harush U., Haviv I., Stemmer S. M., Blum G., Merquiol E., Mardamshina M., Kaminski Strauss S., Friedlander G., Bar J., Kamer I., Reizel Y., Geiger T., Pilpel Y., Levin Y., Tanay A., Barzel B., Reuveni H. & Straussman R. (2021) Nature Cancer. 2, 10, p. 1055-1070  Abstract
  2. Rak R., Polonsky M., Eizenberg-Magar I., Mo Y., Sakaguchi Y., Mizrahi O., Nachshon A., Reich-Zeliger S., Stern-Ginossar N., Dahan O., Suzuki T., Friedman N. & Pilpel Y. (2021) Proceedings of the National Academy of Sciences - PNAS. 118, 42, p. - e210655611.  Abstract
  3. Schirman D., Yakhini Z., Pilpel Y. & Dahan O. (2021) PLoS Genetics. 17, 9, e1009805.  Abstract

2020

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    Aharon-Hefetz N., Frumkin I., Mayshar Y., Dahan O., Pilpel Y. & Rak R. (2020) eLife. 9, e58461.  Abstract
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    Slomka S., Françoise I., Hornung G., Asraf O., Biniashvili T., Pilpel Y. & Dahan O. (2020) Genetics. 216, 2, p. 543-558  Abstract
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    Mikl M., Pilpel Y. & Segal E. (2020) Nature Communications. 11, 1, 3061.  Abstract

2019

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    Mikl M., Hamburg A., Pilpel Y. & Segal E. (2019) Nature Communications. 10, 4572.  Abstract
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    Frumkin I., Yofe I., Bar-Ziv R., Gurvich Y., Lu Y., Voichek Y., Towers R., Schirman D., Krebber H. & Pilpel Y. (2019) PLoS Biology. 17, 8, e3000423.  Abstract
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    Mordret E., Dahan O., Asraf O., Rak R., Yehonadav A., Barnabas G. D., Cox J., Geiger T., Lindner A. B. & Pilpel Y. (2019) Molecular Cell. 75, 3, p. 427-441  Abstract
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    Cohen-Zontag O., Baez C., Lim L. Q. J., Olender T., Schirman D., Dahary D., Pilpel Y. & Gerst J. E. (2019) PLoS Genetics. 15, 7, e1008248.  Abstract
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    Dahan, O., Dorfman, B-S., Sayin, S., Rosener, B., Hua, T., Yarden, A. & Mitchell, A. (2019) PLoS Biology. 17, 6,  Abstract
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    Kaminski Strauss S., Schirman D., Jona G., Brooks A. N., Kunjapur A. M., Ba A. N. N., Flint A., Solt A., Mershin A., Dixit A., Yona A. H., Csorgo B., Busby B. P., Hennig B. P., Pal C., Schraivogel D., Schultz D., Wernick D. G., Agashe D., Levi D., Zabezhinsky D., Russ D., Sass E., Tamar E., Herz E., Levy E. D., Church G. M., Yelin I., Nachman I., Gerst J. E., Georgeson J. M., Adamala K. P., Steinmetz L. M., Ruebsam M., Ralser M., Klutstein M., Desai M. M., Walunjkar N., Yin N., Hefetz N. A., Jakimo N., Snitser O., Adini O., Kumar P., Smith R. S. H., Zeidan R., Hazan R., Rak R., Kishony R., Johnson S., Nouriel S., Vonesch S. C., Foster S., Dagan T., Wein T., Karydis T., Wannier T. M., Stiles T., Olin-Sandoval V., Mueller W. F., Bar-On Y. M., Dahan O. & Pilpel Y. (2019) PLoS Biology. 17, 3, e3000182.  Abstract
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    Zviran A., Mor N., Rais Y., Gingold H., Peles S., Chomsky E., Viukov S., Buenrostro J. D., Scognamiglio R., Weinberger L., Manor Y. S., Krupalnik V., Zerbib M., Hezroni H., Jaitin D. A., Larastiaso D., Gilad S., Benjamin S., Gafni O., Mousa A., Ayyash M., Sheban D., Bayerl J., Aguilera-Castrejon A., Massarwa R., Maza I., Hanna S., Stelzer Y., Ulitsky I., Greenleaf W. J., Tanay A., Trumpp A., Amit I., Pilpel Y., Novershtern N. & Hanna J. H. (2019) Cell Stem Cell. 24, 2, p. 328-341.e9  Abstract

2018

  1. Rak R., Dahan O. & Pilpel Y. (2018) Annual Review of Cell and Developmental Biology. 34, 1, p. 239-264  Abstract
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    Bar-Yaacov D., Pilpel Y. & Dahan O. (2018) RNA Biology. 15, 7, p. 863-867  Abstract
  3. Schirman D., Frumkin I. & Pilpel Y. (2018) Oncotarget. 9, 46, p. 27909-27910  Abstract
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    Frumkin I., Lajoie M. J., Gregg C. J., Hornung G., Church G. M. & Pilpel Y. (2018) Proceedings Of The National Academy Of Sciences Of The United States Of America-Biological Sciences. 115, 21, p. E4940-E4949  Abstract
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    Slomka S. & Pilpel Y. (2018) Cell. 172, 3, p. 391-392  Abstract

2017

  1. application/pdf
    Bar-Yaacov D., Mordret E., Towers R., Biniashvili T., Soyris C., Schwartz S., Dahan O. & Pilpel Y. (2017) Genome Research. 27, 10, p. 1696-1703  Abstract
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    Heinemann M. & Pilpel Y. (2017) Current Opinion in Biotechnology. 46, p. IV-V  Abstract
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    Frumkin I., Schirman D., Rotman A., Li F., Zahavi L., Mordret E., Asraf O., Wu S., Levy S. F. & Pilpel Y. (2017) Molecular Cell. 65, 1, p. 142-153  Abstract

2016

  1. application/pdf
    Bar-Yaacov D., Frumkin I., Yashiro Y., Chujo T., Ishigami Y., Chemla Y., Blumberg A., Schlesinger O., Bieri P., Greber B., Ban N., Zarivach R., Alfonta L., Pilpel Y., Suzuki T. & Mishmar D. (2016) PLoS Biology. 14, 9, e1002557.  Abstract
  2. Sagi D., Rak R., Gingold H., Adir I., Maayan G., Dahan O., Broday L., Pilpel Y. & Rechavi O. (2016) PLoS Genetics. 12, 8, e1006264.  Abstract
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    Tamari Z., Yona A. H., Pilpel Y. & Barkai N. (2016) BMC Genomics. 17, 1, 674.  Abstract
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    Karmon A. & Pilpel Y. (2016) eLife. 5, APRIL2016, e14424.  Abstract
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    Hoffman Y., Bublik D. R., Ugalde A. P., Elkon R., Biniashvili T., Agami R., Oren M. & Pilpel Y. (2016) PLoS Genetics. 12, 2, e1005879.  Abstract

2015

  1. application/pdf
    Yona A. H., Frumkin I. & Pilpel Y. (2015) Cell. 163, 3, p. 549-559  Abstract
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    Pilpel Y. & Rechavi O. (2015) Biology Direct. 10, 1, 34.  Abstract
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    Hoffman Y. & Pilpel Y. (2015) Science. 348, 6230, p. 41-42  Abstract

2014

  1. application/pdf
    Fluman N., Navon S., Bibi E. & Pilpel Y. (2014) eLife. 3, August2014, p. 1-19 03440.  Abstract
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    Hoffman Y., Pilpel Y. & Oren M. (2014) Journal of Molecular Cell Biology. 6, 3, p. 192-197  Abstract
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    Minis A., Dahary D., Manor O., Leshkowitz D., Pilpel Y. & Yaron A. (2014) Developmental Neurobiology. 74, 3, p. 365-381  Abstract
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    Hoffman Y., Bublik D. R., Pilpel Y. & Oren M. (2014) Cell Death and Differentiation. 21, 2, p. 302-309  Abstract
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    Bloom-Ackermann Z., Navon S., Gingold H., Towers R., Pilpel Y. & Dahan O. (2014) PLoS Genetics. 10, 1, e1004084.  Abstract
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    Gingold H., Tehler D., Christoffersen N., Nielsen M., Asmar F., Kooistra S., Christophersen N., Christensen L., Borre M., Sorensen K., Andersen L., Andersen C., Hulleman E., Wurdinger T., Ralfkiaer E., Helin K., Gronbaek K., Omtoft T., Waszak S., Dahan O., Pedersen J., Lund A. & Pilpel Y. (2014) Cell. 158, 6, p. 1281-1292  Abstract

2013

  1. application/pdf
    Yona A. H., Bloom-Ackermann Z., Frumkin I., Hanson-Smith V., Charpak-Amikam Y., Feng Q., Boeke J. D., Dahan O. & Pilpel Y. (2013) eLife. 2013, 2, e01339.  Abstract
  2. application/pdf
    Hoffman Y., Dahary D., Bublik D. R., Oren M. & Pilpel Y. (2013) Bioinformatics. 29, 7, p. 894-902  Abstract
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    Shalem O., Carey L., Zeevi D., Sharon E., Keren L., Weinberger A., Dahan O., Pilpel Y. & Segal E. (2013) PLoS Computational Biology. 9, 3, e1002934.  Abstract

2012

  1. application/pdf
    Yona A. H., Manor Y. S., Herbst R. H., Romano G. H., Mitchell A., Kupiec M., Pilpel Y. & Dahan O. (2012) Proceedings of the National Academy of Sciences of the United States of America. 109, 51, p. 21010-21015  Abstract
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    Gingold H., Dahan O. & Pilpel Y. (2012) Nucleic Acids Research. 40, 20, p. 10053-10063  Abstract
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    Salari R., Wojtowicz D., Zheng J., Levens D., Pilpel Y. & Przytycka T. M. (2012) PLoS Computational Biology. 8, 8, e1002644.  Abstract
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    Ben-Yaakov K., Dagan S. Y., Segal-Ruder Y., Shalem O., Vuppalanchi D., Willis D. E., Yudin D., Rishal I., Rother F., Bader M., Blesch A., Pilpel Y., Twiss J. L. & Fainzilber M. (2012) EMBO Journal. 31, 6, p. 1350-1363  Abstract

2011

  1. application/pdf
    Shalem O., Groisman B., Choder M., Dahan O. & Pilpel Y. (2011) PLoS Genetics. 7, 9, e1002273.  Abstract
  2. Dahan O., Gingold H. & Pilpel Y. (2011) Trends in Genetics. 27, 8, p. 316-322  Abstract
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    Limor-Waisberg K., Carmi A., Scherz A., Pilpel Y. & Furman I. (2011) Nucleic Acids Research. 39, 14, p. 6016-6028  Abstract
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    Pilpel Y. (2011) Yeast Systems Biology. p. 407-425  Abstract
  5. Dahary D., Shalgi R. & Pilpel Y. (2011) Molecular Biology and Evolution. 28, 5, p. 1545-1551  Abstract
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    Mitchell A. & Pilpel Y. (2011) Proceedings of the National Academy of Sciences of the United States of America. 108, 17, p. 7271-7276  Abstract
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    Navon S. & Pilpel Y. (2011) GENOME BIOLOGY. 12, 2, R12.  Abstract
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    Gingold H. & Pilpel Y. (2011) Molecular Systems Biology. 7, 481.  Abstract

2010

  1. application/pdf
    Michaelevski I., Segal-Ruder Y., Rozenbaum M., Medzihradszky K. F., Shalem O., Coppola G., Horn-Saban S., Ben-Yaakov K., Dagan S. Y., Rishal I., Geschwind D. H., Pilpel Y., Burlingame A. L. & Fainzilber M. (2010) Science Signaling. 3, 130, p. ra53  Abstract
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    Avraham R., Sas-Chen A., Manor O., Steinfeld I., Shalgi R., Tarcic G., Bossel N., Zeisel A., Amit I., Zwang Y., Enerly E., Russnes H. G., Biagioni F., Mottolese M., Strano S., Blandino G., Borresen-Dale A., Pilpel Y. & Yakhini Z. (2010) Science Signaling. 3, 124, p. ra43  Abstract
  3. application/pdf
    Shalgi R., Pilpel Y. & Oren M. (2010) Trends in Genetics. 26, 6, p. 253-259  Abstract
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    Shen-Orr S. S., Pilpel Y. & Hunter C. P. (2010) GENOME BIOLOGY. 11, 6, R58.  Abstract
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    Tuller T., Carmi A., Vestsigian K., Navon S., Dorfan Y., Zaborske J., Pan T., Dahan O., Furman I. & Pilpel Y. (2010) Cell. 141, 2, p. 344-354  Abstract
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    Martinez M. R., Soriano J., Tlusty T., Pilpel Y. & Furman I. (2010) Physical Review E. 81, 3, 031924.  Abstract
  7. Christoffersen N. R., Shalgi R., Frankel L. B., Leucci E., Lees M., Klausen M., Pilpel Y., Nielsen F. C., Oren M. & Lund A. H. (2010) Cell Death and Differentiation. 17, 2, p. 236-245  Abstract

2009

  1. application/pdf
    Coupling transcriptional and post-transcriptional miRNA regulation in the control of cell fate
    Shalgi R., Brosh R., Oren M., Pilpel Y. & Rotter V. (2009) AGING-US. 1, 9, p. 762-770  Abstract
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    Kam N., Pilpel Y. & Fainzilber M. (2009) PLoS Computational Biology. 5, 8, e1000477.  Abstract
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    Mitchell A., Romano G. H., Groisman B., Yona A., Dekel E., Kupiec M., Dahan O. & Pilpel Y. (2009) Nature. 460, 7252, p. 220-224  Abstract

     

    [Highlight]

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    Kafri R., Springer M. & Pilpel Y. (2009) Cell. 136, 3, p. 389-392  Abstract

2008

  1. application/pdf
    Michal L., Mizrahi-Man O. & Pilpel Y. (2008) PLoS Genetics. 4, 3, e1000018.  Abstract
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    Shalem O., Dahan O., Levo M., Martinez M. R., Furman I., Segal E. & Pilpel Y. (2008) Molecular Systems Biology. 4, 4.  Abstract
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    Brosh R., Shalgi R., Liran A., Landan G., Korotayev K., Nguyen G. H., Enerly E., Johnsen H., Buganim Y., Solomon H., Goldstein I., Madar S., Goldfinger N., Brresen-Dale A., Ginsberg D., Harris C. C., Pilpel Y., Oren M. & Rotter V. (2008) Molecular Systems Biology. 4, 229.  Abstract
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    Kafri R., Dahan O., Levy J. & Pilpel Y. (2008) Proceedings of the National Academy of Sciences of the United States of America. 105, 4, p. 1243-1248  Abstract

2007

  1. application/pdf
    Shalgi R., Lieber D., Oren M. & Pilpel Y. (2007) PLoS Computational Biology. 3, 7, p. 1291-1304  Abstract
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    Segal L., Lapidot M., Solan Z., Ruppin E., Pilpel Y. & Horn D. (2007) Bioinformatics. 23, 13, p. i440-i449  Abstract
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    Man O. & Pilpel Y. (2007) Nature Genetics. 39, 3, p. 415-421  Abstract
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    Examination of the tRNA adaptation index as a predictor of protein expression levels
    Man O., Sussman J. & Pilpel Y. (2007) Systems Biology And Regulatory Genomics. 4023, p. 107-118  Abstract
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    Characterization of the effects of TF binding site variations on gene expression towards predicting the functional outcomes of regulatory SNPs
    Lapidot M. & Pilpel Y. (2007) Systems Biology And Regulatory Genomics. 4023, p. 51-61  Abstract

2006

  1. application/pdf
    Lapidot M. & Pilpel Y. (2006) EMBO Reports. 7, 12, p. 1216-1222  Abstract
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    Kafri R., Levy M. & Pilpel Y. (2006) Proceedings of the National Academy of Sciences of the United States of America. 103, 31, p. 11653-11658  Abstract
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    Bar-Even A., Paulsson J., Maheshri N., Carmi M., O'Shea E., Pilpel Y. & Barkai N. (2006) Nature Genetics. 38, 6, p. 636-643  Abstract
  4. application/pdf
    Furman I. & Pilpel Y. (2006) Molecular Systems Biology. 2, 2006.0030.  Abstract
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    Xi Y., Shalgi R., Fodstad O., Pilpel Y. & Ju J. (2006) Clinical Cancer Research. 12, 7 I, p. 2014-2024  Abstract

2005

  1. application/pdf
    Sigal N., Vardy E., Molshanski-Mor S., Eitan A., Pilpel Y., Schuldiner S. & Bibi E. (2005) Biochemistry. 44, 45, p. 14870-14880  Abstract
  2. application/pdf
    Shalgi R., Lapidot M., Shamir R. & Pilpel Y. (2005) GENOME BIOLOGY. 6, 10, p. R86  Abstract
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    Kafri R., Bar-Even A. & Pilpel Y. (2005) Nature Genetics. 37, 3, p. 295-299  Abstract
  4. application/pdf
    Tabach Y., Milyavsky M., Shats I., Brosh R., Zuk O., Yitzhaky A., Mantovani R., Domany E., Rotter V. & Pilpel Y. (2005) Molecular Systems Biology. 1, p. 2005.0022  Abstract
  5. application/pdf
    Garten Y., Kaplan S. & Pilpel Y. (2005) Nucleic Acids Research. 33, 2, p. 605-615  Abstract

2003

  1. application/pdf
    Lapidot M. & Pilpel Y. (2003) Nucleic Acids Research. 31, 13, p. 3824-3828  Abstract

2002

  1. application/pdf
    Sudarsanam P., Pilpel Y. & Church G. M. (2002) Genome Research. 12, 11, p. 1723-31  Abstract
  2. application/pdf
    Cohen B. A., Pilpel Y., Mitra R. D. & Church G. M. (2002) Molecular Biology of the Cell. 13, 5, p. 1608-14  Abstract
  3. application/pdf
    Zhu Z., Pilpel Y. & Church G. (2002) Journal of Molecular Biology. 318, 1, p. 71-81  Abstract

2001

  1. application/pdf
    Pilpel Y., Sudarsanam P. & Church G. M. (2001) Nature Genetics. 29, 2, p. 153-9  Abstract
  2. application/pdf
    Lapidot M., Pilpel Y., Gilad Y., Falcovitz A., Sharon D., Haaf T. & Lancet D. (2001) Genomics. 71, 3, p. 296-306  Abstract
  3. application/pdf
    Fuchs T., Glusman G., Horn-Saban S., Lancet D. & Pilpel Y. (2001) Human Genetics. 108, 1, p. 1-13  Abstract

2000

  1. Conticello S. G., Pilpel Y., Glusman G. & Fainzilber M. (2000) Trends in Genetics. 16, 2, p. 57-59  Abstract
  2. application/pdf
    Glusman G., Bahar A., Sharon D., Pilpel Y., White J. & Lancet D. (2000) Mammalian Genome. 11, 11, p. 1016-1023  Abstract

1999

  1. application/pdf
    Pilpel Y., Ben-Tal N. & Lancet D. (1999) Journal of Molecular Biology. 294, 4, p. 921-935  Abstract
  2. application/pdf
    Sharon D., Glusman G., Pilpel Y., Khen M., Gruetzner F., Haaf T. & Lancet D. (1999) Genomics. 61, 1, p. 24-36  Abstract
  3. application/pdf
    Pilpel Y. & Lancet D. (1999) Nature. 398, 6725, p. 285-287  Abstract
  4. application/pdf
    Pilpel Y., Sosinsky A. & Lancet D. (1999) Molecular Biology of the Brain. p. 93-104  Abstract
  5. application/pdf
    Pilpel Y. & Lancet D. (1999) Protein Science. 8, 5, p. 969-977  Abstract
  6. Segre D., Ben-Eli D., Pilpel Y., Kedem O. & Lancet D. (1999) Instruments, Methods, And Missions For Astrobiology Ii. 3755, p. 144-162  Abstract

1998

  1. Segre D., Pilpel Y. & Lancet D. (1998) Physica A. 249, 4-Jan, p. 558-564  Abstract
  2. Sharon D., Glusman G., Pilpel Y., Horn-Saban S. & Lancet D. (1998) Olfaction And Taste Xii: An International Symposium. 855, p. 182-193  Abstract
  3. Segré D., Lancet D., Kedem O. & Pilpel Y. (1998) Origins of Life and Evolution of the Biosphere. 28, 4-6, p. 501-514  Abstract

1994

  1. Lancet D., Kedem O. & Pilpel Y. (1994) Berichte der Bunsengesellschaft/Physical Chemistry Chemical Physics. 98, 9, p. 1166-1169  Abstract