Publications

2019

  1. Mikl M., Hamburg A., Pilpel Y. & Segal E., 8 Oct 2019, In: Nature Communications. 10, 14 p., 4572.  Abstract
    Research output: Article
  2. Mordret E., Dahan O., Asraf O., Rak R., Yehonadav A., Barnabas G. D., Cox J., Geiger T., Lindner A. B. & Pilpel Y., 8 Aug 2019, In: Molecular Cell. 75, 3, p. 427-441 15 p.  Abstract
    Research output: Article
  3. Frumkin I., Yofe I., Bar-Ziv R., Gurvich Y., Lu Y., Voichek Y., Towers R., Schirman D., Krebber H. & Pilpel Y., 23 Aug 2019, In: PLoS Biology. 17, 8, 23 p., 3000423.  Abstract
    Research output: Article
  4. Cohen-Zontag O., Baez C., Lim L. Q. J., Olender T., Schirman D., Dahary D., Pilpel Y. & Gerst J. E., 1 Jul 2019, In: PLoS Genetics. 15, 7, 36 p., 1008248.  Abstract
    Research output: Article
  5. Kaminski Strauss S., Schirman D., Jona G., Brooks A. N., Kunjapur A. M., Ba A. N. N., Flint A., Solt A., Mershin A., Dixit A., Yona A. H., Csorgo B., Busby B. P., Hennig B. P., Pal C., Schraivogel D., Schultz D., Wernick D. G., Agashe D., Levi D., Zabezhinsky D., Russ D., Sass E., Tamar E., Herz E., Levy E. D., Church G. M., Yelin I., Nachman I., Gerst J. E., Georgeson J. M., Adamala K. P., Steinmetz L. M., Ruebsam M., Ralser M., Klutstein M., Desai M. M., Walunjkar N., Yin N., Hefetz N. A., Jakimo N., Snitser O., Adini O., Kumar P., Smith R. S. H., Zeidan R., Hazan R., Rak R., Kishony R., Johnson S., Nouriel S., Vonesch S. C., Foster S., Dagan T., Wein T., Karydis T., Wannier T. M., Stiles T., Olin-Sandoval V., Mueller W. F., Bar-On Y. M., Dahan O. & Pilpel Y., Mar 2019, In: PLoS Biology. 17, 3, p. e3000182 17 p., 3000182.  Abstract
    Research output: Article
  6. Zviran A., Mor N., Rais Y., Gingold H., Peles S., Chomsky E., Viukov S., Buenrostro J. D., Scognamiglio R., Weinberger L., Manor Y. S., Krupalnik V., Zerbib M., Hezroni H., Jaitin D. A., Larastiaso D., Gilad S., Benjamin S., Gafni O., Mousa A., Ayyash M., Sheban D., Bayerl J., Aguilera-Castrejon A., Massarwa R., Maza I., Hanna S., Stelzer Y., Ulitsky I., Greenleaf W. J., Tanay A., Trumpp A., Amit I., Pilpel Y., Novershtern N. & Hanna J. H., 7 Feb 2019, In: Cell Stem Cell. 24, 2, p. 328-341.e9 24 p.  Abstract
    Research output: Article

2018

  1. Frumkin I., Lajoie M. J., Gregg C. J., Hornung G., Church G. M. & Pilpel Y., 22 May 2018, In: Proceedings Of The National Academy Of Sciences Of The United States Of America-Biological Sciences. 115, 21, p. E4940-E4949 10 p.  Abstract
    Research output: Article
  2. Slomka S. & Pilpel Y., Jan 2018, In: Cell. 172, 3, p. 391-392 2 p.  Abstract
    Research output: Editorial
  3. Bar-Yaacov D., Pilpel Y. & Dahan O., Jan 2018, In: RNA Biology. 15, 7, p. 863-867 5 p.  Abstract
    Research output: Article
  4. Rak R., Dahan O. & Pilpel Y., Jan 2018, ANNUAL REVIEW OF CELL AND DEVELOPMENTAL BIOLOGY, VOL 34. Lehmann R.(eds.). Annual Reviews Inc., p. 239-264 26 p. (Annual Review of Cell and Developmental Biology).  Abstract
    Research output: Chapter

2017

  1. Bar-Yaacov D., Mordret E., Towers R., Biniashvili T., Soyris C., Schwartz S., Dahan O. & Pilpel Y., Oct 2017, In: Genome Research. 27, 10, p. 1696-1703 8 p.  Abstract
    Research output: Article
  2. Gene architectures that minimize cost of gene expression
    Frumkin I., Schirman D., Rotman A. & Pilpel Y., Sep 2017, p. 235-236 2 p.  Abstract
    Research output: Paper
  3. Zviran A., Mor N., Rais Y., Gingold H., Peles S., Chomsky E., Viukov S., Buenrostro J. D., Weinberger L., Manor Y. S., Krupalnik V., Zerbib M., Hezroni H., Jaitin D. A., Larastiaso D., Gilad S., Benjamin S., Mousa A., Ayyash M., Sheban D., Bayerl J., Aguilera Castrejon A., Massarwa R., Maza I., Hanna S., Amit I., Stelzer Y., Ulitsky I., Greenleaf W. J., Pilpel Y., Novershtern N. & Hanna J. H., 7 Sep 2017, In: BioRxiv. 73 p.  Abstract
    Research output: Article
  4. Heinemann M. & Pilpel Y., Aug 2017, In: Current Opinion in Biotechnology. 46, p. IV-V 2 p.  Abstract
    Research output: Editorial
  5. Frumkin I., Schirman D., Rotman A., Li F., Zahavi L., Mordret E., Asraf O., Wu S., Levy S. F. & Pilpel Y., 5 Jan 2017, In: Molecular Cell. 65, 1, p. 142-153 12 p.  Abstract
    Research output: Article

2016

  1. Bar Yaacov Y. D., Frumkin I., Yashiro Y., Chujo T., Ishigami Y., Chemla Y., Blumberg A., Schlesinger O., Bieri P., Greber B., Ban N., Zarivach R., Alfonta L., Pilpel Y., Suzuki T. & Mishmar D., Sep 2016, In: PLoS Biology. 14, 9, 21 p., e1002557.  Abstract
    Research output: Article
  2. Karmon A. & Pilpel Y., Apr 2016, In: eLife. 5,  Abstract
    Research output: Article
  3. Hoffman Y., Bublik D. R., Ugalde A. P., Elkon R., Biniashvili T., Agami R., Oren M. & Pilpel Y., Feb 2016, In: PLoS Genetics. p. 260-262 3 p.  Abstract
    Research output: Article
  4. Tamari Z., Yona A. H., Pilpel Y. & Barkai N., Jan 2016, In: BMC Genomics. 17, p. 674  Abstract
    Research output: Article

2015

  1. Pilpel Y. & Rechavi O., Jul 2015, In: Biology Direct. 10, 5 p., 34.  Abstract
    Research output: Editorial
  2. Hoffman Y. & Pilpel Y., Apr 2015, In: Science. 348, 6230, p. 41-42 2 p.  Abstract
    Research output: Editorial

2014

  1. Hoffman Y., Pilpel Y. & Oren M., Jun 2014, In: Journal of Molecular Cell Biology. 6, 3, p. 192-197 6 p.  Abstract
    Research output: Review article
  2. Minis A., Dahary D., Manor O., Leshkowitz D., Pilpel Y. & Yaron A., Mar 2014, In: Developmental Neurobiology. 74, 3, p. 365-381 17 p.  Abstract
    Research output: Article
  3. Hoffman Y., Bublik D. R., Pilpel Y. & Oren M., Feb 2014, In: Cell Death and Differentiation. 21, 2, p. 302-309 8 p.  Abstract
    Research output: Article
  4. Bloom-Ackermann Z., Navon S., Gingold H., Towers R., Pilpel Y. & Dahan O., Jan 2014, In: PLoS Genetics. 10, 1, 16 p., e1004084.  Abstract
    Research output: Article

2013

  1. Yona A. H., Bloom-Ackermann Z., Frumkin I., Hanson-Smith V., Charpak-Amikam Y., Feng Q., Boeke J. D., Dahan O. & Pilpel Y., Dec 2013, In: eLife. 2, 17 p.  Abstract
    Research output: Article
  2. Hoffman Y., Dahary D., Bublik D. R., Oren M. & Pilpel Y., Apr 2013, In: Bioinformatics. 29, 7, p. 894-902 9 p.  Abstract
    Research output: Article
  3. Shalem O., Carey L., Zeevi D., Sharon E., Keren L., Weinberger A., Dahan O., Pilpel Y. & Segal E., Mar 2013, In: PLoS Computational Biology. 9, 3, 12 p.  Abstract
    Research output: Article

2012

  1. Gingold H., Dahan O. & Pilpel Y., Nov 2012, In: Nucleic Acids Research. 40, 20, p. 10053-10063 11 p.  Abstract
    Research output: Article
  2. Salari R., Wojtowicz D., Zheng J., Levens D., Pilpel Y. & Przytycka T. M., Aug 2012, In: PLoS Computational Biology. 8, 8, 7 p.  Abstract
    Research output: Article
  3. Ben Yaakov Y. K., Dagan S. Y., Segal-Ruder Y., Shalem O., Vuppalanchi D., Willis D. E., Yudin D., Rishal I., Rother F., Bader M., Blesch A., Pilpel Y., Twiss J. L. & Fainzilber M., Mar 2012, In: EMBO Journal. 31, 6, p. 1350-1363 14 p.  Abstract
    Research output: Article
  4. Widespread promoter-mediated coordination of transcription and mRNA degradation
    Dori-Bachash M., Shalem O., Manor Y. S., Pilpel Y. & Tirosh I., Jan 2012, In: Genome Biology. 13, 12, 14 p.  Abstract
    Research output: Article

2011

  1. Shalem O., Groisman B., Choder M., Dahan O. & Pilpel Y., Sep 2011, In: PLoS Genetics. 7, 9, 10 p., e1002273.  Abstract
    Research output: Article
  2. Limor-Waisberg K., Carmi A., Scherz A., Pilpel Y. & Furman I., Aug 2011, In: Nucleic Acids Research. 39, 14, p. 6016-6028 13 p.  Abstract
    Research output: Article
  3. Dahan O., Gingold H. & Pilpel Y., Aug 2011, In: Trends in Genetics. 27, 8, p. 316-322 7 p.  Abstract
    Research output: Review article
  4. Dahary D., Shalgi R. & Pilpel Y., May 2011, In: Molecular Biology and Evolution. 28, 5, p. 1545-1551 7 p.  Abstract
    Research output: Article
  5. Mitchell A. & Pilpel Y., Apr 2011, In: Proceedings of the National Academy of Sciences of the United States of America. 108, 17, p. 7271-7276 6 p.  Abstract
    Research output: Article
  6. Gingold H. & Pilpel Y., Apr 2011, In: Molecular Systems Biology. 7, 13 p., 481.  Abstract
    Research output: Review article
  7. Navon S. & Pilpel Y., Jan 2011, In: GENOME BIOLOGY. 12, 2, 10 p., R12.  Abstract
    Research output: Article
  8. Pilpel Y., Jan 2011, Yeast Systems Biology: Methods And Protocols. Humana Press, p. 407-425 19 p. (Methods in Molecular Biology).  Abstract
    Research output: Chapter (peer-reviewed)

2010

  1. Michaelevski I., Segal-Ruder Y., Rozenbaum M., Medzihradszky K. F., Shalem O., Coppola G., Horn-Saban S., Ben Yaakov Y. K., Dagan S. Y., Rishal I., Geschwind D. H., Pilpel Y., Burlingame A. L. & Fainzilber M., Jul 2010, In: Science Signaling. 3, 130, 10 p., ra53.  Abstract
    Research output: Article
  2. Shalgi R., Pilpel Y. & Oren M., Jun 2010, In: Trends in Genetics. 26, 6, p. 253-259 7 p.  Abstract
    Research output: Review article
  3. Avraham R., Sas-Chen A., Manor O., Steinfeld I., Shalgi R., Tarcic G., Bossel N., Zeisel A., Amit I., Zwang Y., Enerly E., Russnes H. G., Biagioni F., Mottolese M., Strano S., Blandino G., Borresen-Dale A., Pilpel Y. & Yakhini Z., Jun 2010, In: Science Signaling. 3, 124, 11 p., ra43.  Abstract
    Research output: Article
  4. Martinez M. R., Soriano J., Tlusty T., Pilpel Y. & Furman I., Mar 2010, In: Physical Review E. 81, 3, 11 p.  Abstract
    Research output: Article
  5. Christoffersen N. R., Shalgi R., Frankel L. B., Leucci E., Lees M., Klausen M., Pilpel Y., Nielsen F. C., Oren M. & Lund A. H., Feb 2010, In: Cell Death and Differentiation. 17, 2, p. 236-245 10 p.  Abstract
    Research output: Article
  6. Shen-Orr S. S., Pilpel Y. & Hunter C. P., Jan 2010, In: Genome Biology. 11, 6, 13 p.  Abstract
    Research output: Article

2009

  1. Coupling transcriptional and post-transcriptional miRNA regulation in the control of cell fate
    Shalgi R., Brosh R., Oren M., Pilpel Y. & Rotter V., Sep 2009, In: AGING-US. 1, 9, p. 762-770 9 p.  Abstract
    Research output: Review article
  2. Kam N., Pilpel Y. & Fainzilber M., Aug 2009, In: PLoS Computational Biology. 5, 8, 14 p.  Abstract
    Research output: Article

2008

  1. Brosh R., Shalgi R., Liran A., Landan G., Korotayev K., Nguyen G. H., Enerly E., Johnsen H., Buganim Y., Solomon H., Goldstein I., Madar S., Goldfinger N., Brresen-Dale A., Ginsberg D., Harris C. C., Pilpel Y., Oren M. & Rotter V., Nov 2008, In: Molecular Systems Biology. 4, 15 p.  Abstract
    Research output: Article
  2. Shalem O., Dahan O., Levo M., Martinez M. R., Furman I., Segal E. & Pilpel Y., Oct 2008, In: Molecular Systems Biology. 4, 10 p.  Abstract
    Research output: Article
  3. Michal L., Mizrahi-Man O. & Pilpel Y., Mar 2008, In: PLoS Genetics. 4, 3, 12 p.  Abstract
    Research output: Article
  4. Kafri R., Dahan O., Levy J. & Pilpel Y., Jan 2008, In: Proceedings of the National Academy of Sciences of the United States of America. 105, 4, p. 1243-1248 6 p.  Abstract
    Research output: Article

2007

  1. Shalgi R., Lieber D., Oren M. & Pilpel Y., Jul 2007, In: PLoS Computational Biology. 3, 7, p. 1291-1304 14 p.  Abstract
    Research output: Article
  2. Segal L., Lapidot M., Solan Z., Ruppin E., Pilpel Y. & Horn D., Jul 2007, In: Bioinformatics. 23, 13, p. I440-I449 10 p.  Abstract
    Research output: Meeting Abstract
  3. Man O. & Pilpel Y., Mar 2007, In: Nature Genetics. 39, 3, p. 415-421 7 p.  Abstract
    Research output: Article
  4. Characterization of the effects of TF binding site variations on gene expression towards predicting the functional outcomes of regulatory SNPs
    Lapidot M. & Pilpel Y., Jan 2007, In: Systems Biology And Regulatory Genomics. 4023, p. 51-61 11 p.  Abstract
    Research output: Conference article
  5. Examination of the tRNA adaptation index as a predictor of protein expression levels
    Man O., Sussman J. & Pilpel Y., Jan 2007, In: Systems Biology And Regulatory Genomics. 4023, p. 107-118 12 p.  Abstract
    Research output: Conference article

2006

  1. Lapidot M. & Pilpel Y., Dec 2006, In: EMBO Reports. 7, 12, p. 1216-1222 7 p.  Abstract
    Research output: Article
  2. Kafri R., Levy M. & Pilpel Y., Aug 2006, In: Proceedings of the National Academy of Sciences of the United States of America. 103, 31, p. 11653-11658 6 p.  Abstract
    Research output: Article
  3. Bar-Even A., Paulsson J., Maheshri N., Carmi M., O'Shea E., Pilpel Y. & Barkai N., Jun 2006, In: Nature Genetics. 38, 6, p. 636-643 8 p.  Abstract
    Research output: Article
  4. Xi Y., Shalgi R., Fodstad O., Pilpel Y. & Ju J., Apr 2006, In: Clinical Cancer Research. 12, 7, p. 2014-2024 11 p.  Abstract
    Research output: Article
  5. Furman I. & Pilpel Y., Jan 2006, In: Molecular Systems Biology. 2, 2 p.  Abstract
    Research output: Editorial
  6. Rotter V., Milyavsky M., Tabach Y., Shats I., Erez N., Cohen Y., Tang X., Kalis M., Buganim Y., Goldfinger N., Ginsberg D., Domany E. & Pilpel Y., Jan 2006, In: Tumor Biology. 27, suppl. 1, p. 1-1 1 p.  Abstract
    Research output: Meeting Abstract

2005

  1. Sigal N., Vardy E., Molshanski-Mor S., Eitan A., Pilpel Y., Schuldiner S. & Bibi E., Nov 2005, In: Biochemistry. 44, 45, p. 14870-14880 11 p.  Abstract
    Research output: Article
  2. Kafri R., Bar-Even A. & Pilpel Y., Mar 2005, In: Nature Genetics. 37, 3, p. 295-299 5 p.  Abstract
    Research output: Article
  3. Shalgi R., Lapidot M., Shamir R. & Pilpel Y., Jan 2005, In: Genome Biology. 6, 10, 15 p.  Abstract
    Research output: Article
  4. Tabach Y., Milyavsky M., Shats I., Brosh R., Zuk O., Yitzhaky A., Mantovani R., Domany E., Rotter V. & Pilpel Y., Jan 2005, In: Molecular Systems Biology. 1, 15 p.  Abstract
    Research output: Article
  5. Garten Y., Kaplan S. & Pilpel Y., Jan 2005, In: Nucleic Acids Research. 33, 2, p. 605-615 11 p.  Abstract
    Research output: Article

2003

  1. Lapidot M. & Pilpel Y., Jul 2003, In: Nucleic Acids Research. 31, 13, p. 3824-3828 5 p.  Abstract
    Research output: Article
  2. Pilpel Y., Bogin O., Brumfeld V. & Reich Z., Apr 2003, In: Biochemistry. 42, 12, p. 3519-3526 8 p.  Abstract
    Research output: Article

2001

  1. Reich Z., Kapon R., Nevo R., Pilpel Y., Zmora S. & Scolnik Y., Oct 2001, In: Biotechnology Advances. 19, 6, p. 451-485 35 p.  Abstract
    Research output: Review article
  2. Lapidot M., Pilpel Y., Gilad Y., Falcovitz A., Sharon D., Haaf T. & Lancet D., Feb 2001, In: Genomics. 71, 3, p. 296-306 11 p.  Abstract
    Research output: Article
  3. Fuchs T., Glusman G., Horn-Saban S., Lancet D. & Pilpel Y., Jan 2001, In: Human Genetics. 108, 1, p. 1-13 13 p.  Abstract
    Research output: Article

2000

  1. Glusman G., Bahar A., Sharon D., Pilpel Y., White J. & Lancet D., Nov 2000, In: Mammalian Genome. 11, 11, p. 1016-1023 8 p.  Abstract
    Research output: Article
  2. Conticello S., Pilpel Y., Glusman G. & Fainzilber M., Feb 2000, In: Trends in Genetics. 16, 2, p. 57-59 3 p.  Abstract
    Research output: Editorial

1999

  1. Pilpel Y., Ben-Tal N. & Lancet D., Dec 1999, In: Journal of Molecular Biology. 294, 4, p. 921-935 15 p.  Abstract
    Research output: Article
  2. Sharon D., Glusman G., Pilpel Y., Khen M., Gruetzner F., Haaf T. & Lancet D., Oct 1999, In: Genomics. 61, 1, p. 24-36 13 p.  Abstract
    Research output: Article
  3. The variable and conserved interfaces of modeled olfactory receptor proteins
    Pilpel Y. & Lancet D., May 1999, In: Protein Science. 8, 5, p. 969-977 9 p.  Abstract
    Research output: Article
  4. Pilpel Y. & Lancet D., Mar 1999, In: Nature. 398, 6725, p. 285-+ 2 p.  Abstract
    Research output: Editorial
  5. Molecular biology of olfactory receptors
    Pilpel Y., Sosinsky A. & Lancet D., Jan 1999, In: Essays In Biochemistry, Vol 33. 33, p. 93-104 12 p.  Abstract
    Research output: Review article
  6. Segre D., Ben-Eli D., Pilpel Y., Kedem O. & Lancet D., Jan 1999, In: Instruments, Methods, And Missions For Astrobiology Ii. 3755, p. 144-162 19 p.  Abstract
    Research output: Meeting Abstract

1998

  1. Segre D., Lancet D., Kedem O. & Pilpel Y., Oct 1998, In: Origins of Life and Evolution of Biospheres. 28, 6-Apr, p. 501-514 14 p.  Abstract
    Research output: Meeting Abstract
  2. Segre D., Pilpel Y. & Lancet D., Feb 1998, In: Physica A. 249, 4-Jan, p. 558-564 7 p.  Abstract
    Research output: Meeting Abstract
  3. Sharon D., Glusman G., Pilpel Y., Horn-Saban S. & Lancet D., Jan 1998, In: Olfaction And Taste Xii: An International Symposium. 855, p. 182-193 12 p.  Abstract
    Research output: Meeting Abstract
  4. Molecular biology of olfactory receptors
    Pilpel Y., Sosinsky A. & Lancet D., Jan 1998, In: Essays In Biochemistry, Vol 33, 1998. 33, p. 93-104 12 p.  Abstract
    Research output: Review article

1994

  1. EMERGENCE OF ORDER IN SMALL AUTOCATALYTIC SETS MAINTAINED FAR FROM EQUILIBRIUM - APPLICATION OF A PROBABILISTIC RECEPTOR AFFINITY DISTRIBUTION (RAD) MODEL
    Lancet D., Kedem O. & Pilpel Y., Sep 1994, In: Berichte Der Bunsen-Gesellschaft-Physical Chemistry Chemical Physics. 98, 9, p. 1166-1169 4 p.  Abstract
    Research output: Conference article