Objective

Software Engineer/Technical Leader (Bioinformatics, IT)

C++, Perl, Python, SQL, Java, J2EE, .NET

Experience

• DNA pattern recognition, driven by expressional, functional and phylogenetic data
• High-performance distributed computing
• Computational means for biological network analysis

• Corporate bioinformatical infrastructure - high-throughput SNP-based screening of druggable targets for common diseases
  (Oracle PL/SQL, ASP.NET, BioPerl, R, Octave/Matlab, Dynamite)
• Biomedical knowledge acquisition and clustering
  (NCBI Toolkit/Pubmed/UMLS, Oracle, R)
• Re-factoring and implementation of LIMS (Oracle PL/SQL, OLAP, C#, VBA)
• Visualization/annotation of genomics-related data (LDAS/GMOD – BioPerl/mod_perl/Apache, Omnigene – JBoss/Tomcat; WSDbfetch - Axis)

• J2EE infrastructure for distributed image storage (EJB/JSP - WebSphere, LDAP, Oracle; O/R Mapping - CocoBase)
• Protocols for client-server applications (proprietary HTTP extension, SSL, TCP, UDP) and Web services (XML-RPC, SOAP, WSDL)
• Consulting and tuition for company partners and co-workers (Java, Windows SDK, COM, Web applications)

• Analysis and data modeling for medical enterprise informational system (ERwin, Rational Rose, MS SQL Server)
• Framework for biomedical knowledge acquisition (MFC, ATL, MTS)
• Semi-empiric Natural Language Generation (MFC, B-trees)

Education

Ph.D. Candidate, Bioinformatics (protein folding, DNA alignment)

M.Sc. Biotechnology Graduated Summa Cum Laude

IT Skills